MOLECULAR PHYLOGENY OF MAIDENHAIR FERN GENUS ADIANTUM (PTERIDACEAE) FROM LESSER SUNDA ISLANDS INDONESIA BASED ON RBCL AND TRNL-F
Abstract
The Lesser Sunda Islands of Indonesia are composed of small islands scattered from Bali to Timor Island. We analyzed a molecular phylogeny of Adiantum collected from Lesser Sunda Islands to reveal its phylogenetic relationships. A total of 12 species of Adiantum from this region and seven species from Java Island were collected and used in this study. Two cpDNA regions (rbcL and trnL-F) were chosen as markers and phylogenetic analyses were conducted using Neighbour-Joining (NJ) and Maximum Parsimony (MP) methods. The tree topologies reconstructed by NJ and MP from specimens used in this study and other species downloaded from GenBank are congruent in which trees are divided into five major clades. Adiantum species of Lesser Sunda Islands are not monophyletic and comprises three clades, i. e. Clade I composed of A. hispidulum group, Clade III composed of A. peruvianum group and Clade IV or A. caudatum group, each together with extra-Lesser Sunda samples. No sample from Lesser Sunda Islands examined is located in Clade II (A. tenerum group) and V (A. capillus-veneris group).
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ADJIE, B., TAKAMIYA, M., OHTA, M., OHSAWA, T. A. & WATANO, Y. 2008. Molecular phylogeny of the lady fern genus Athyrium in Japan based on chloroplast rbcL and trnL-trnF sequences. Acta Phytotaxonomica et Geobotanica 59(2): 79–95.
AFRIASTINI, J. J. 2003. Adiantum L. In: DE WINTER, W. P. & AMOROSO, V. B. (Eds.). Plant Resources of South-East Asia No. 15 (2) Cryptogams : Ferns and Fern Allies. Bogor: PROSEA. Pp: 50–55.
AVISE, J. C. 2001. Molecular markers, natural history and evolution. 4th printing. Massachusetts, Kluwer Academic Publishers. 340 p.
BOONKERD, T. & POLLAWATN, R. 2013. Note on Adiantum hispidulum (Pteridaceae), a new record species to fern flora of Thailand. Songklanakarin Journal of Science and Technology 35(5): 513–516.
BOSTOCK, P. D., CHAMBERS, T. C. & FARRANT, P. A. 1998. Adiantaceae. Flora of Australia. CSIRO Publishing, Collingwood.
BOUMA, W. L. M. 2008. A phylogenetic investigation of the New Zealand Pteridaceae ferns (thesis). New Zealand, Victoria University of Wellington.
BROWNSEY, P. J. & PERRIE, L. R. 2011. A revised checklist of Fijian ferns and Lycophytes. Telopea 13(3): 513–562.
CHING, R. C. 1957. On the genus Adiantum L. of China with notes on some related species from neighboring regions. Acta Phytotaxonomica Sinica 6: 301–354.
CHRISTENHUSZ, M. J. M., ZHANG, X. & SCHNEIDER, H. 2011. A linear sequence of extant families and genera of Lycophytes and ferns. Phytotaxa 19:7–54.
DE GROOT, G. A., DURING, H. J., MAAS, J. W., SCHNEIDER, H., VOGEL, J. C. & ERKENS, R. H. J. 2011. Use of rbcL and trnL-F as a two-locus DNA barcode for identification of NW-European ferns: an ecological perspective. PLoS ONE 6(1): e16371.
DE LANG, R. 2011. The snakes of the Lesser Sunda Islands (Nusa Tenggara), Indonesia. Asian Herpetological Research 2(1): 46–54.
DOYLE, J. J. & DOYLE, J. L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11–15.
EBIHARA, A., NITTA, J. H. & ITO, M. 2010. Molecular species identification with rich floristic sampling: DNA barcoding the Pteridophyte flora of Japan. PLoS ONE5(12): e15136.
HASEBE, M., OMORI, T., NAKAZAWA, M., SANO, T., KATO, M. & IWATSUKI, K. 1994. rbcL Gene sequences provide evidence for the evolutionary lineages of Leptosporangiate ferns. Proceedings of the National Academy of Sciences 91: 5730–5734.
HOLTTUM, R. E. 1968. Flora of Malaya Vol. II. : Ferns of Malaya. 2nd Edition. Singapore: Government Printing Office. Pp: 596–604.
HOSHIZAKi, B. J. & Moran, R. C. 2002. Fern Grower’s Manual. Revised and expanded edition. Portland: Timber Press Inc. Pp: 159–176.
IWATSUKI, K., YAMAZAKI, T., BOUFFORD, D. E. & OHBA, H. (Eds.). 1995. Flora of Japan Vol. I :Pteridophyta and Gymnospermae. Tokyo: Kodansha Ltd. Pp: 82–84.
JONES, D. L. 1998. Encyclopaedia of Ferns. Melbourne: Lothian Publishing Company Pty., Ltd. 433 p.
JUKES, T. H. & CANTOR, C. R. 1969. Evolution of protein molecules. In: H. N. Munro (Ed.). Mammalian Protein Metabolism. New York: Academic Press. Pp: 21–132.
KORPELAINEN, H., DE BRITTO, J., DOUBLET, J. & PRAVIN, S. 2005. Four tropical, closely related fern species belonging to the genus Adiantum L. are genetically distinct as revealed by ISSR fingerprinting. Genetica 125(2-3): 283–291.
LARGE, M. F. & BRAGGINS, J. E. 1993. A morphological assessment of Adiantum hispidulum Swartz and A. pubescens Schkuhr (Adiantaceae: Filicales) in New Zealand. New Zealand Journal of Botany 31: 403–417.
LARKIN, M.A., BLACKSHIELDS, G., BROWN, N. P., CHENNA, R., MCGETTIGAN, P. A., MCWILLIAM, H., VALENTIN, F., WALLACE, I. M., WILM, A., LOPEZ, R., THOMPSON, J. D., GIBSON, T. J. & HIGGINS, D. G. 2007. ClustalW and ClustalX version 2. Bioinformatics 23(21): 2947–2948.
LI, F., TAN, B. C., BUCHBENDER, V., MORAN, R. C., ROUHAN, G., WANG, C. & QUANDT, D. 2009. Identifying a mysterious aquatic fern gametophyte. Plant Systematics and Evolution 281:77–86.
LU, J., WEN, J., LUTZ, S., WANG, Y. & LI, D. 2012. Phylogenetic relationships of Chinese Adiantum Based on five plastid markers. Journal of Plant Research 125(2): 237–249.
MCCARTHY, M. R. 2012. Molecular systematics and morphology of the Adiantum peruvianum group (Pteridaceae) (dissertation). USA : Miami University.
NEWMASTER, S. G., FAZEKAS, A. J. & RAGUPATHY, S. 2006. DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach. Canadian Journal of Botany 84: 335–341.
PARRIS, B. S. & CROXALL, J. P. 1974. Adiantum viridescens Colenso in New Zealand. New Zealand Journal of Botany 12(2): 227–233.
PATIL, S., PATIL, S. & DONGARE, V. 2013. The genus Adiantum L. from Maharashtra: a note on addition of two species for Maharashtra, India. Fern Gazette 19(5): 159–163.
PHAN, K. L. 2010. The updated checklist of the fern flora of Vietnam following the classification scheme of A. Smith et al. (2006). Journal of Fairylake Botanical Garden 9(3): 1–13.
POSTHUMUS, O. 1944. Malayan fern studies III: the ferns of the Lesser Sunda Islands. Annals of the Botanic Gardens 51(1): 35–113.
ROTHFELS, C. J. & SCHUETTPELZ, E. 2013. Accelerated rate of molecular evolution for Vittarioid ferns is strong and not driven by selection. Systematic Biology. DOI: 10.1093/sysbio/syst058.
RUHFEL, B., LINDSAY, S. & DAVIS, C. C. 2008. Phylogenetic placement of Rheopteris and the polyphyly of Monogramma (Pteridaceaes. l.): evidence from rbcL sequence data. Systematic Botany 33(1):37–43.
SCAMMAN, E. 1960. The Maidenhair ferns (Adiantum) of Costa Rica – contributions from the Gray Herbarium of Harvard University No. 187. Harvard University Herbaria. Pp: 3–22.
SCHUETTPELZ, E., SCHNEIDER, H., HUIET, L., WINDHAM, M. D. & PRYER, K. M. 2007. A molecular phylogeny of the fern family Pteridaceae: assessing overall relationships and the affinities of previously unsampled genera. Molecular Phylogenetics and Evolution 44: 1172–1185.
SCHUETTPELZ, E. & PRYER, K. M. 2007. Fern phylogeny inferred from 400 Leptosporangiate species and three plastid genes. Taxon 56(4): 1037–1050.
SOLTIS, D. E. & SOLTIS, P. S. 1998. Choosing an approach and an appropriate gene for phylogenetic analysis. In: D. E. SOLTIS, P. S. SOLTIS & J. J. DOYLE (Eds.). Molecular systematics of plants II : DNA Sequencing. Netherlands: Kluwer Academic Publishers. Pp: 1–42.
TABERLET, P., GIELLY, L., PAUTOU, G. & BOUVET, J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17:1105–1109.
TAMURA, K., PETERSON, D., PETERSON, N., STECHER, G., NEI, M. & KUMAR, S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28(10): 2731–2739.
TRYON, R. M. & TRYON, A. F. 1982. Ferns and allied plants, with special reference to tropical America. New York: Springer-Verlag.
ZHANG, G. M., LIAO, W. B., DING, M. Y., LIN, Y. X., WU, Z. H., ZHANG, X. C., DONG, S. Y., PRADO, J., GILBERT, M. G., YATSKIEVYCH, G., RANKER, T. A., HOOPER, E. A., ALVERSON, E. R., METZGAR, J. S., FUNSTON, A. M., MASUYAMA, S. & KATO, M. 2013. Pteridaceae. In: WU, Z. Y., RAVEN, P. H. & HONG, D. Y. (Eds.). Flora of China Vol. 2-3 (Pteridophytes). Beijing: Science Press; St. Louis: Missouri Botanical Garden Press. Pp: 169–256.
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