EXPLORING THE DYNAMICS DURING COMMUNITY ASSEMBLY THROUGH COMMUNITY PHYLOGENETICS

Rena Tri Hernawati, Daisy Wowor, Nicolas Hubert
| Abstract views: 641 | PDF views: 551

Abstract

Species diversify through speciation and accumulate in ecological community, a process known as community assembly. Relying on both evolutionary mechanisms acting at regional scale and ecological mechanisms acting at local scale, the process of community assembly results from intricate interactions among mechanisms at play across varying spatial and temporal scales. During the last decade, community assembly theory has been reconsidered in the light of evolutionary dynamics of species diversification and ecological dynamics have been formalized in an explicit spatial framework (i.e. metacommunity theory). The aims of the present review are: (1) to present the community assembly theory and the main paradigms that have been proposed, (2) to discuss how the metacommunity theory as defined an explicit spatial framework for community ecology, (3)to discuss the potential mechanisms at play during community assembly and their associated predictions, (4) to present new approaches to study community assembly based on phylogenetics approaches and discuss how they have been integrated in empirical studies.

Keywords

Community assembly, Phylogenetic Community Structure, Biogeography, Dispersal, Speciation

Full Text:

PDF

References

Alonso, D., R.S. Etienne, & A.J. McKane 2006. The merits of neutral theory. Trends in Ecology and Evolution 21(8): 451-457.

Cadotte, M.W., T.J. Davies, J. Regetz, S.W. Kembel, E. Cleland, T.H. Oakley 2010. Phylogenetic diversity metrics for ecological communities : integrating species richness, abundance and evolutionary history. Ecology Letters 13: 96–105.

Cavender-Bares, J., D.D. Ackerly, D.A. Baum, F.A. Bazzaz 2004. Phylogenetic overdispersion in Floridian oak communities. The American Naturalist 163(6): 823-843.

Cavender-Bares, J., A. Keen, B. Miles 2006. Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale. Ecology 87(7): 109-122.

Chase, J.M., N.J. Kraft, K.G. Smith, M. Vellend, B.D. Inouye 2011. Using null models to disentangle variation in community dissimilarity from variation in α-diversity. Ecosphere 2(2): 1-10.

Chesson, P. 2000. Mechanisms of maintenance on species diversity. Annual Review of Ecology and Systematics 31: 343–366.

Emerson, B.C. & R.G. Gillespie 2008. Phylogenetic analysis of community assembly and structure over space and time. Trends in Ecology and Evolution 23(11): 619-630.

Faith, D.P., 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation 61:1–10.

Fisher, R.A., A.S. Corbet & C.B. Williams 1943. The relation between the number of species and the number of individuals in a random sample of an animal population. Journal of Animal Ecology 12(1): 42–58.

Gillespie, R. 2004. Community assembly through adaptive radiation in Hawaiian spiders. Science 303: 356-359.

Hanski, I. 2010. The theories of island biogeography and metapopulation dynamics: science marches forward, but the legacy of good ideas lasts for a long time. In: Losos, J.B. & R.E. Ricklefs (eds.), The Theory of Island Biogeography Revisited. Princeton University Press, pp. 186-213.

Hardy, OJ & B. Senterre 2007. Characterizing the phylogenetic structure of communities by an additive partitioning of phylogenetic diversity. Journal of Ecology 95: 493-506.

Hubbell, S.P. 2001. The unified Neutral Theory of Biodiversity and Biogeography. Princeton University Press, USA, pp. 376.

Hubert, N., V. Calcagno, R. Etienne, N. Mouquet 2015. Metacommunity speciation models and their implications for diversification theory. Ecology Letters, in press.

Hubert, N., R. Hanner, E. Holm, N.E. Mandrak, E. Taylor, M. Burridge, D. Watkinson, P. Dumont, A. Curry, P. Bentzen et al. 2008. Identifying Canadian freshwater fishes through DNA barcodes. PLoS ONE 3(6): 229-248.

Hultgren, K.M. & J.E. Duffy 2012. Phylogenetic community ecology and the role of social dominance in sponge-dwelling shrimp. Ecology Letters 15(7): 704-713.

Kembel, S.W. & P. Hubbell 2006. The phylogenetic structure of a neotropical forest tree community. Ecology 87(7): 86-99.

Kneitel, J.M. & J.M. Chase 2004. Trade-offs in community ecology : linking spatial scales and species coexistence. Ecology Letters 7: 69–80.

Kraft, N.J.B., W.K. Cornwell, C.O. Webb & D.D. Ackerly 2007. Trait evolution, community assembly, and the phylogenetic structure of ecological communities. The American Naturalist 170(2): 271-283.

Kraft, N.J.B., R. Valencia & D.D. Ackerly 2008. Functional traits and niche-based tree community assembly in an Amazonian forest. Science 322: 580-582.

Leibold, M.A., M. Holyoak, N. Mouquet, P. Amarasekare, J.M. Chase, M.F. Hoopes, R.D. Holt, J.B. Shurin, R. Law, D. Tilman, M. Loreau & A. Gonzalez 2004. The metacommunity concept : a framework for multi-scale community ecology. Ecology Letters 7: 601–613.

Levine, J.M. & M. Rees 2002. Coexistence and relative abundance in annual plant assemblages: the roles of competition and colonization. The American Naturalist 160(4): 452–467.

Logue, B., N. Mouquet, H. Peter & H. Hillebrand 2011. Empirical approaches to metacommunities : a review and comparison with theory. Trends in Ecology and Evolution 26(9): 482-491.

Lovette, I.J. & W.M. Hochachka 2006. Simultaneous effects of phylogenetic niche conservatism and competition on avian community structure. Ecology 87(7): 14–28.

MacArthur, R.H. 1960. On the relative abundance of species. The American Naturalist 94(874): 25–36.

MacArthur, R.H. & E.O. Wilson 1967. The theory of Island Biogeography. Princeton University Press, Princeton, pp. 224.

Preston, F.W. 1948. The commonnes, and rarity, of species. Ecology 29(3): 254–283.

Schoener, T.W. 2010. The MacArthur-Wilson equilibrium model: a chronicle of what it said and how it was tested. In: Losos, J.B. & R.E. Ricklefs (eds.), The theory of Island Biogeography Revisited. Princeton University Press, Princeton, p. 52-87.

Simpson, E.H. 1949. Measurement of diversity. Nature 163: 688.

Shannon, C.E. 1948. A mathematical theory of communication. The Bell System Technical Journal 27: 379–423.

Vamosi, J.C. & S.M. Vamosi 2007. Body size, rarity, and phylogenetic community structure: insights from diving beetle assemblages of Alberta. Diversity and Distributions 13: 1–10.

Vamosi, S.M., S.B. Heard, J.C. Vamosi & C.O. Webb 2009. Emerging patterns in the comparative analysis of phylogenetic community structure. Molecular Ecology 18: 572–592.

Webb, C.O. 2000. Exploring the phylogenetic structure of ecological communities : an example for rain forest trees. The American Naturalist 156(2): 145-155.

Webb, C.O., D.D. Ackerly, M.A. McPeek & M.J. .Donoghue 2002. Phylogenies and community ecology. Annual Review of Ecology, Evolution, and Systematics 33: 475-505.

Webb, C.O., J.B. Losos & A.A. Agrawal 2006. Special Issue. The Ecological Society of America. Washington DC.

Weiher, E. & P.A. Keddy 1995. The assembly of experimental wet land communities. Oikos 73(3): 323–335.

Weiher, E., G.D.P. Clarke & P. Keddy 1998. Community assembly rules, morphological dispersion, and the co-existence of plant species. Oikos 81: 309–322.

Wiens, J.J. & M.J. Donoghue 2004. Historical biogeography, ecology and species richness. Trends in Ecology and Evolution 19(12): 639–644.

Wilson, D.S. 1992. Complex interactions in metacommunities, with implications for biodiversity and higher levels of selection. Ecology 73(6): 1984–2000.

Copyright (c) 2016 Research Center for Biology, Indonesian Institute of Sciences (LIPI)

Refbacks

  • There are currently no refbacks.